3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
6XZB|1|A2|G|2238
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_145 not in the Motif Atlas
Homologous match to IL_5J7L_325
Geometric discrepancy: 0.0562
The information below is about IL_5J7L_325
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6XZB|1|A2|U|2081
6XZB|1|A2|A|2082
6XZB|1|A2|G|2083
*
6XZB|1|A2|U|2236
6XZB|1|A2|G|2237
6XZB|1|A2|G|2238
6XZB|1|A2|G|2239

Current chains

Chain A2
23S rRNA

Nearby chains

Chain C2
50S ribosomal protein L2
Chain X2
50S ribosomal protein L28

Coloring options:


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