IL_6XZB_145

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6XZB|1|A2|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_145 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0562

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6XZB|1|A2|U|2081
6XZB|1|A2|A|2082
6XZB|1|A2|G|2083
*
6XZB|1|A2|U|2236
6XZB|1|A2|G|2237
6XZB|1|A2|G|2238
6XZB|1|A2|G|2239

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain X2

50S ribosomal protein L28