IL_6XZB_148
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GAUGUGUAGGAUAGGUG*CACCCUUU
- Length
- 25 nucleotides
- Bulged bases
- 6XZB|1|A2|U|2111, 6XZB|1|A2|U|2118, 6XZB|1|A2|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZB_148 not in the Motif Atlas
- Geometric match to IL_5J7L_328
- Geometric discrepancy: 0.1045
- The information below is about IL_5J7L_328
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20245.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6XZB|1|A2|G|2107
6XZB|1|A2|A|2108
6XZB|1|A2|U|2109
6XZB|1|A2|G|2110
6XZB|1|A2|U|2111
6XZB|1|A2|G|2112
6XZB|1|A2|U|2113
6XZB|1|A2|A|2114
6XZB|1|A2|G|2115
6XZB|1|A2|G|2116
6XZB|1|A2|A|2117
6XZB|1|A2|U|2118
6XZB|1|A2|A|2119
6XZB|1|A2|G|2120
6XZB|1|A2|G|2121
6XZB|1|A2|U|2122
6XZB|1|A2|G|2123
*
6XZB|1|A2|C|2175
6XZB|1|A2|A|2176
6XZB|1|A2|C|2177
6XZB|1|A2|C|2178
6XZB|1|A2|C|2179
6XZB|1|A2|U|2180
6XZB|1|A2|U|2181
6XZB|1|A2|U|2182
Current chains
- Chain A2
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: