IL_6XZB_148

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

6XZB|1|A2|U|2111, 6XZB|1|A2|U|2118, 6XZB|1|A2|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_148 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZB|1|A2|G|2107
6XZB|1|A2|A|2108
6XZB|1|A2|U|2109
6XZB|1|A2|G|2110
6XZB|1|A2|U|2111
6XZB|1|A2|G|2112
6XZB|1|A2|U|2113
6XZB|1|A2|A|2114
6XZB|1|A2|G|2115
6XZB|1|A2|G|2116
6XZB|1|A2|A|2117
6XZB|1|A2|U|2118
6XZB|1|A2|A|2119
6XZB|1|A2|G|2120
6XZB|1|A2|G|2121
6XZB|1|A2|U|2122
6XZB|1|A2|G|2123
*
6XZB|1|A2|C|2175
6XZB|1|A2|A|2176
6XZB|1|A2|C|2177
6XZB|1|A2|C|2178
6XZB|1|A2|C|2179
6XZB|1|A2|U|2180
6XZB|1|A2|U|2181
6XZB|1|A2|U|2182

Current chains

Chain A2

23S rRNA

Nearby chains