IL_6XZB_150

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6XZB|1|A2|U|2131, 6XZB|1|A2|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_150 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6XZB|1|A2|C|2129
6XZB|1|A2|U|2130
6XZB|1|A2|U|2131
6XZB|1|A2|U|2132
6XZB|1|A2|G|2133
6XZB|1|A2|A|2134
6XZB|1|A2|A|2135
6XZB|1|A2|G|2136
*
6XZB|1|A2|U|2155
6XZB|1|A2|G|2156
6XZB|1|A2|G|2157
6XZB|1|A2|A|2158
6XZB|1|A2|G|2159

Current chains

Chain A2

23S rRNA

Nearby chains