IL_6XZB_158

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_158 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XZB|1|A2|C|2466
6XZB|1|A2|C|2467
6XZB|1|A2|A|2468
6XZB|1|A2|A|2469
6XZB|1|A2|G|2470
*
6XZB|1|A2|C|2480
6XZB|1|A2|G|2481
6XZB|1|A2|A|2482
6XZB|1|A2|C|2483
6XZB|1|A2|G|2484

Current chains

Chain A2

23S rRNA

Nearby chains

Chain M2

50S ribosomal protein L16

Chain e2

50S ribosomal protein L36

Chain g2

Transfer RNA; tRNA