IL_6XZB_164

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6XZB|1|A2|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_164 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.1822

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6XZB|1|A2|C|2591
6XZB|1|A2|G|2592
*
6XZB|1|A2|C|2601
6XZB|1|A2|A|2602
6XZB|1|A2|G|2603

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain f2

Transfer RNA; tRNA

Chain g2

Transfer RNA; tRNA