IL_6XZB_184

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6XZB|1|A2|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_184 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1044

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6XZB|1|A2|A|844
6XZB|1|A2|A|845
6XZB|1|A2|U|846
6XZB|1|A2|U|847
6XZB|1|A2|C|848
*
6XZB|1|A2|G|930
6XZB|1|A2|U|931
6XZB|1|A2|U|932
6XZB|1|A2|A|933
6XZB|1|A2|U|934

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Z2

50S ribosomal protein L30