IL_6XZB_190

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

6XZB|1|A2|A|2126, 6XZB|1|A2|C|2161, 6XZB|1|A2|C|2164, 6XZB|1|A2|C|2165, 6XZB|1|A2|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_190 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZB|1|A2|G|2123
6XZB|1|A2|G|2124
6XZB|1|A2|G|2125
6XZB|1|A2|A|2126
6XZB|1|A2|G|2127
6XZB|1|A2|G|2128
*
6XZB|1|A2|C|2160
6XZB|1|A2|C|2161
6XZB|1|A2|G|2162
6XZB|1|A2|A|2163
6XZB|1|A2|C|2164
6XZB|1|A2|C|2165
6XZB|1|A2|U|2166
6XZB|1|A2|U|2167
6XZB|1|A2|G|2168
6XZB|1|A2|A|2169
6XZB|1|A2|A|2170
6XZB|1|A2|A|2171
6XZB|1|A2|U|2172
6XZB|1|A2|A|2173
6XZB|1|A2|C|2174
6XZB|1|A2|C|2175

Current chains

Chain A2

23S rRNA

Nearby chains