IL_6Y0G_018

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6Y0G|1|L5|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_018 not in the Motif Atlas

Geometric match to IL_7MLW_007

Geometric discrepancy: 0.3703

The information below is about IL_7MLW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6Y0G|1|L5|G|443
6Y0G|1|L5|G|444
6Y0G|1|L5|U|445
6Y0G|1|L5|C|446
*
6Y0G|1|L5|G|1300
6Y0G|1|L5|C|1301
6Y0G|1|L5|U|1302
6Y0G|1|L5|A|1303
6Y0G|1|L5|C|1304

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a