IL_6Y0G_024

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6Y0G|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_024 not in the Motif Atlas

Geometric match to IL_8C3A_483

Geometric discrepancy: 0.2431

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

6Y0G|1|L5|G|487
6Y0G|1|L5|G|488
*
6Y0G|1|L5|C|665
6Y0G|1|L5|G|666
6Y0G|1|L5|A|667
6Y0G|1|L5|C|668
6Y0G|1|L5|C|669

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28