IL_6Y0G_089

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6Y0G|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_089 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2628

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6Y0G|1|L5|G|2542
6Y0G|1|L5|A|2543
6Y0G|1|L5|G|2544
6Y0G|1|L5|U|2545
6Y0G|1|L5|G|2546
6Y0G|1|L5|G|2547
*
6Y0G|1|L5|C|2772
6Y0G|1|L5|G|2773
6Y0G|1|L5|C|2774

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38