IL_6Y0G_117

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6Y0G|1|L5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_117 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1203

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6Y0G|1|L5|U|3927
6Y0G|1|L5|A|3928
6Y0G|1|L5|G|3929
*
6Y0G|1|L5|U|4181
6Y0G|1|L5|G|4182
6Y0G|1|L5|G|4183
6Y0G|1|L5|G|4184

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lo

60S ribosomal protein L36a