IL_6Y0G_131

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6Y0G|1|L5|A|4518, 6Y0G|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_131 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0835

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6Y0G|1|L5|C|4458
6Y0G|1|L5|U|4459
*
6Y0G|1|L5|A|4517
6Y0G|1|L5|A|4518
6Y0G|1|L5|C|4519
6Y0G|1|L5|G|4520

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23