IL_6Y0G_135

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6Y0G|1|L5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_135 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1003

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6Y0G|1|L5|C|4537
6Y0G|1|L5|G|4538
*
6Y0G|1|L5|C|4547
6Y0G|1|L5|A|4548
6Y0G|1|L5|G|4549

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain C4

Nascent peptide

Chain D4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain LI

60S ribosomal protein L10-like