IL_6Y0G_205

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6Y0G|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_205 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1191

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6Y0G|1|S2|G|924
6Y0G|1|S2|G|925
6Y0G|1|S2|A|926
6Y0G|1|S2|C|927
*
6Y0G|1|S2|G|1014
6Y0G|1|S2|U|1015
6Y0G|1|S2|U|1016
6Y0G|1|S2|U|1017
6Y0G|1|S2|U|1018

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27