IL_6Y0G_234

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUA*UCCCCCAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_234 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2845

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6Y0G|1|S2|G|1406
6Y0G|1|S2|U|1407
6Y0G|1|S2|U|1408
6Y0G|1|S2|A|1409
*
6Y0G|1|S2|U|1432
6Y0G|1|S2|C|1433
6Y0G|1|S2|C|1434
6Y0G|1|S2|C|1435
6Y0G|1|S2|C|1436
6Y0G|1|S2|C|1437
6Y0G|1|S2|A|1438
6Y0G|1|S2|A|1439
6Y0G|1|S2|C|1440

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20