IL_6Y0G_236

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_236 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.1799

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6Y0G|1|S2|U|1560
6Y0G|1|S2|A|1561
6Y0G|1|S2|C|1562
*
6Y0G|1|S2|G|1573
6Y0G|1|S2|C|1574
6Y0G|1|S2|G|1575

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain ST

40S ribosomal protein S19