IL_6Y0G_245
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAGG*UCGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y0G_245 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3538
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Y0G|1|S2|U|1733
6Y0G|1|S2|G|1734
6Y0G|1|S2|A|1735
6Y0G|1|S2|G|1736
6Y0G|1|S2|G|1737
*
6Y0G|1|S2|U|1797
6Y0G|1|S2|C|1798
6Y0G|1|S2|G|1799
6Y0G|1|S2|A|1800
6Y0G|1|S2|A|1801
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: