3D structure

PDB id
6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in classical-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGACAGGAUUG*CUCGAUUCC
Length
20 nucleotides
Bulged bases
6Y0G|1|S2|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y0G|1|S2|G|1280
6Y0G|1|S2|G|1281
6Y0G|1|S2|A|1282
6Y0G|1|S2|C|1283
6Y0G|1|S2|A|1284
6Y0G|1|S2|G|1285
6Y0G|1|S2|G|1286
6Y0G|1|S2|A|1287
6Y0G|1|S2|U|1288
6Y0G|1|S2|U|1289
6Y0G|1|S2|G|1290
*
6Y0G|1|S2|C|1309
6Y0G|1|S2|U|1310
6Y0G|1|S2|C|1311
6Y0G|1|S2|G|1312
6Y0G|1|S2|A|1313
6Y0G|1|S2|U|1314
6Y0G|1|S2|U|1315
6Y0G|1|S2|C|1316
6Y0G|1|S2|C|1317

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SK
40S ribosomal protein S10
Chain SM
40S ribosomal protein S12
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:

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