IL_6Y0G_274

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

6Y0G|1|L8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_274 not in the Motif Atlas

Homologous match to IL_8P9A_371

Geometric discrepancy: 0.1772

The information below is about IL_8P9A_371

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6Y0G|1|L8|U|64
6Y0G|1|L8|A|65
6Y0G|1|L8|A|66
*
6Y0G|1|L8|U|92
6Y0G|1|L8|C|93
6Y0G|1|L8|G|94
6Y0G|1|L8|A|95

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LY

60S ribosomal protein L26

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37