IL_6Y2L_010

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCCGCU*GGCGCG

Length

13 nucleotides

Bulged bases

6Y2L|1|L5|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_010 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3583

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6Y2L|1|L5|C|178
6Y2L|1|L5|G|179
6Y2L|1|L5|C|180
6Y2L|1|L5|C|181
6Y2L|1|L5|G|182
6Y2L|1|L5|C|183
6Y2L|1|L5|U|184
*
6Y2L|1|L5|G|253
6Y2L|1|L5|G|254
6Y2L|1|L5|C|255
6Y2L|1|L5|G|256
6Y2L|1|L5|C|257
6Y2L|1|L5|G|258

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35