IL_6Y2L_179

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGACC*GGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_179 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3679

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Y2L|1|S2|C|188
6Y2L|1|S2|U|189
6Y2L|1|S2|G|190
6Y2L|1|S2|A|191
6Y2L|1|S2|C|192
6Y2L|1|S2|C|193
*
6Y2L|1|S2|G|206
6Y2L|1|S2|G|207
6Y2L|1|S2|G|208
6Y2L|1|S2|A|209
6Y2L|1|S2|U|210
6Y2L|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8