IL_6Y2L_216

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_216 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2221

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6Y2L|1|S2|C|1103
6Y2L|1|S2|G|1104
6Y2L|1|S2|G|1105
*
6Y2L|1|S2|C|1127
6Y2L|1|S2|G|1129

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27