IL_6Y2L_227

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_227 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.2893

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Y2L|1|S2|A|1291
6Y2L|1|S2|C|1292
6Y2L|1|S2|A|1293
6Y2L|1|S2|G|1294
*
6Y2L|1|S2|C|1305
6Y2L|1|S2|U|1306
6Y2L|1|S2|U|1307
6Y2L|1|S2|U|1308

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Sd

40S ribosomal protein S29