IL_6Y2L_234

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6Y2L|1|S2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_234 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3721

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6Y2L|1|S2|C|1395
6Y2L|1|S2|A|1396
6Y2L|1|S2|U|1397
6Y2L|1|S2|G|1398
6Y2L|1|S2|C|1399
*
6Y2L|1|S2|G|1447
6Y2L|1|S2|A|1448
6Y2L|1|S2|G|1449
6Y2L|1|S2|G|1450

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1