IL_6Y57_010

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGUGG*CG

Length

8 nucleotides

Bulged bases

6Y57|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_010 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2008

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6Y57|1|L5|U|184
6Y57|1|L5|C|185
6Y57|1|L5|G|186
6Y57|1|L5|U|187
6Y57|1|L5|G|188
6Y57|1|L5|G|189
*
6Y57|1|L5|C|252
6Y57|1|L5|G|253

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lj

60S ribosomal protein L37