3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGGUAA*UAAAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y57_060 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1693
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6Y57|1|L5|C|1732
6Y57|1|L5|G|1733
6Y57|1|L5|G|1734
6Y57|1|L5|U|1735
6Y57|1|L5|A|1736
6Y57|1|L5|A|1737
*
6Y57|1|L5|U|1792
6Y57|1|L5|A|1793
6Y57|1|L5|A|1794
6Y57|1|L5|A|1795
6Y57|1|L5|U|1796
6Y57|1|L5|G|1797

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
60S ribosomal protein L5
Chain LF
60S ribosomal protein L7
Chain LI
60S ribosomal protein L10-like
Chain LT
60S ribosomal protein L21

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