IL_6Y57_085

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUGGC*GCGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_085 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3861

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6Y57|1|L5|G|2542
6Y57|1|L5|A|2543
6Y57|1|L5|G|2544
6Y57|1|L5|U|2545
6Y57|1|L5|G|2546
6Y57|1|L5|G|2547
6Y57|1|L5|C|2548
*
6Y57|1|L5|G|2771
6Y57|1|L5|C|2772
6Y57|1|L5|G|2773
6Y57|1|L5|C|2774

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38