IL_6Y57_097

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6Y57|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_097 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.1034

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6Y57|1|L5|C|2867
6Y57|1|L5|G|2868
6Y57|1|L5|U|2869
6Y57|1|L5|A|2870
6Y57|1|L5|A|2871
6Y57|1|L5|C|2872
*
6Y57|1|L5|G|2877
6Y57|1|L5|G|2878
6Y57|1|L5|A|2879
6Y57|1|L5|U|2880
6Y57|1|L5|A|2881
6Y57|1|L5|A|2882
6Y57|1|L5|G|2883

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA