IL_6Y57_247

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_247 not in the Motif Atlas

Homologous match to IL_1FIR_001

Geometric discrepancy: 0.4949

The information below is about IL_1FIR_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|B4|A|4
6Y57|1|B4|G|5
6Y57|1|B4|A|6
*
6Y57|1|B4|U|66
6Y57|1|B4|C|67
6Y57|1|B4|U|68

Current chains

Chain B4

P/E tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA