3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAUAG*CAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCC
Length
50 nucleotides
Bulged bases
6Y57|1|D4|U|8, 6Y57|1|D4|U|47, 6Y57|1|D4|U|60
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y57|1|D4|G|5
6Y57|1|D4|G|6
6Y57|1|D4|A|7
6Y57|1|D4|U|8
6Y57|1|D4|A|9
6Y57|1|D4|G|10
*
6Y57|1|D4|C|25
6Y57|1|D4|A|26
6Y57|1|D4|G|27
6Y57|1|D4|G|28
6Y57|1|D4|G|29
6Y57|1|D4|G|30
6Y57|1|D4|A|31
6Y57|1|D4|U|32
6Y57|1|D4|U|33
6Y57|1|D4|G|34
6Y57|1|D4|A|35
6Y57|1|D4|A|36
6Y57|1|D4|A|37
6Y57|1|D4|A|38
6Y57|1|D4|U|39
6Y57|1|D4|C|40
6Y57|1|D4|C|41
6Y57|1|D4|C|42
6Y57|1|D4|C|43
6Y57|1|D4|G|44
6Y57|1|D4|U|45
6Y57|1|D4|G|46
6Y57|1|D4|U|47
6Y57|1|D4|C|48
6Y57|1|D4|C|49
6Y57|1|D4|U|50
6Y57|1|D4|U|51
6Y57|1|D4|G|52
6Y57|1|D4|G|53
6Y57|1|D4|U|54
6Y57|1|D4|U|55
6Y57|1|D4|C|56
6Y57|1|D4|G|57
6Y57|1|D4|A|58
6Y57|1|D4|U|59
6Y57|1|D4|U|60
6Y57|1|D4|C|61
6Y57|1|D4|C|62
6Y57|1|D4|G|63
6Y57|1|D4|A|64
6Y57|1|D4|G|65
6Y57|1|D4|U|66
6Y57|1|D4|C|67
6Y57|1|D4|C|68

Current chains

Chain D4
A/P tRNA

Nearby chains

Chain A4
mRNA
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LI
60S ribosomal protein L10-like
Chain LJ
60S ribosomal protein L11
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SP
40S ribosomal protein S15
Chain Se
40S ribosomal protein S30

Coloring options:

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