IL_6Y57_249

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUC*GCCCGG

Length

10 nucleotides

Bulged bases

6Y57|1|L5|C|1214, 6Y57|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_249 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3089

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Y57|1|L5|C|1081
6Y57|1|L5|C|1082
6Y57|1|L5|U|1083
6Y57|1|L5|C|1084
*
6Y57|1|L5|G|1213
6Y57|1|L5|C|1214
6Y57|1|L5|C|1215
6Y57|1|L5|C|1216
6Y57|1|L5|G|1217
6Y57|1|L5|G|1218

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7