IL_6Y57_274

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAGUCU*AGCU

Length

15 nucleotides

Bulged bases

6Y57|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|S2|A|599
6Y57|1|S2|G|600
6Y57|1|S2|G|601
6Y57|1|S2|G|602
6Y57|1|S2|C|603
6Y57|1|S2|A|604
6Y57|1|S2|A|605
6Y57|1|S2|G|606
6Y57|1|S2|U|607
6Y57|1|S2|C|608
6Y57|1|S2|U|609
*
6Y57|1|S2|A|634
6Y57|1|S2|G|635
6Y57|1|S2|C|636
6Y57|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30