IL_6Y57_279

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6Y57|1|S2|C|1403, 6Y57|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_279 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.2905

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

6Y57|1|S2|A|1402
6Y57|1|S2|C|1403
6Y57|1|S2|U|1404
6Y57|1|S2|A|1405
*
6Y57|1|S2|U|1441
6Y57|1|S2|U|1442
6Y57|1|S2|C|1443
6Y57|1|S2|U|1444

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20