IL_6Y69_082

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

6Y69|1|A|C|2165, 6Y69|1|A|U|2166, 6Y69|1|A|A|2171, 6Y69|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y69|1|A|G|2124
6Y69|1|A|G|2125
6Y69|1|A|A|2126
6Y69|1|A|G|2127
*
6Y69|1|A|C|2161
6Y69|1|A|G|2162
6Y69|1|A|A|2163
6Y69|1|A|C|2164
6Y69|1|A|C|2165
6Y69|1|A|U|2166
6Y69|1|A|U|2167
6Y69|1|A|G|2168
6Y69|1|A|A|2169
6Y69|1|A|A|2170
6Y69|1|A|A|2171
6Y69|1|A|U|2172
6Y69|1|A|A|2173
6Y69|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA