3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGUC*GUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_062 not in the Motif Atlas
Homologous match to IL_8C3A_034
Geometric discrepancy: 0.0481
The information below is about IL_8C3A_034
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6Y6X|1|L5|G|1586
6Y6X|1|L5|G|1587
6Y6X|1|L5|U|1588
6Y6X|1|L5|C|1589
*
6Y6X|1|L5|G|1605
6Y6X|1|L5|U|1606
6Y6X|1|L5|C|1607

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Lj
60S ribosomal protein L37

Coloring options:


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