IL_6Y6X_067

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6Y6X|1|L5|C|1707, 6Y6X|1|L5|G|1708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|C|1694
6Y6X|1|L5|U|1695
6Y6X|1|L5|C|1696
6Y6X|1|L5|G|1697
6Y6X|1|L5|C|1698
6Y6X|1|L5|A|1699
6Y6X|1|L5|G|1700
6Y6X|1|L5|A|1701
6Y6X|1|L5|C|1702
6Y6X|1|L5|C|1703
6Y6X|1|L5|C|1704
6Y6X|1|L5|G|1705
6Y6X|1|L5|A|1706
6Y6X|1|L5|C|1707
6Y6X|1|L5|G|1708
6Y6X|1|L5|C|1709
6Y6X|1|L5|C|1714
6Y6X|1|L5|C|1715
6Y6X|1|L5|G|1716
6Y6X|1|L5|C|1717
6Y6X|1|L5|C|1718
6Y6X|1|L5|A|1719
6Y6X|1|L5|C|1720
6Y6X|1|L5|G|1721
*
6Y6X|1|L5|C|1841
6Y6X|1|L5|G|1842

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29