IL_6Y6X_088

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAG*CACC

Length

39 nucleotides

Bulged bases

6Y6X|1|L5|G|1981, 6Y6X|1|L5|A|1984, 6Y6X|1|L5|C|1996, 6Y6X|1|L5|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|G|1969
6Y6X|1|L5|A|1970
6Y6X|1|L5|C|1971
6Y6X|1|L5|G|1972
6Y6X|1|L5|G|1973
6Y6X|1|L5|U|1974
6Y6X|1|L5|G|1975
6Y6X|1|L5|G|1976
6Y6X|1|L5|C|1977
6Y6X|1|L5|C|1978
6Y6X|1|L5|A|1979
6Y6X|1|L5|U|1980
6Y6X|1|L5|G|1981
6Y6X|1|L5|G|1982
6Y6X|1|L5|A|1983
6Y6X|1|L5|A|1984
6Y6X|1|L5|G|1985
6Y6X|1|L5|U|1986
6Y6X|1|L5|C|1987
6Y6X|1|L5|G|1988
6Y6X|1|L5|G|1989
6Y6X|1|L5|A|1990
6Y6X|1|L5|A|1991
6Y6X|1|L5|U|1992
6Y6X|1|L5|C|1993
6Y6X|1|L5|C|1994
6Y6X|1|L5|G|1995
6Y6X|1|L5|C|1996
6Y6X|1|L5|U|1997
6Y6X|1|L5|A|1998
6Y6X|1|L5|A|1999
6Y6X|1|L5|G|2000
6Y6X|1|L5|G|2001
6Y6X|1|L5|A|2002
6Y6X|1|L5|G|2003
*
6Y6X|1|L5|C|2016
6Y6X|1|L5|A|2017
6Y6X|1|L5|C|2018
6Y6X|1|L5|C|2019

Current chains

Chain L5

28S ribosomal RNA

Nearby chains