3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_110 not in the Motif Atlas
Homologous match to IL_5TBW_076
Geometric discrepancy: 0.0677
The information below is about IL_5TBW_076
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

6Y6X|1|L5|G|2847
6Y6X|1|L5|G|2848
6Y6X|1|L5|A|2849
6Y6X|1|L5|A|2850
*
6Y6X|1|L5|U|3840
6Y6X|1|L5|C|3841

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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