3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
6Y6X|1|L5|G|4183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_130 not in the Motif Atlas
Homologous match to IL_8C3A_100
Geometric discrepancy: 0.1061
The information below is about IL_8C3A_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38958.10
Basepair signature
cWW-cWW-cWW-tHS
Number of instances in this motif group
9

Unit IDs

6Y6X|1|L5|U|3927
6Y6X|1|L5|A|3928
6Y6X|1|L5|G|3929
*
6Y6X|1|L5|U|4181
6Y6X|1|L5|G|4182
6Y6X|1|L5|G|4183
6Y6X|1|L5|G|4184

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain Lo
60S ribosomal protein L36a

Coloring options:


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