3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUGAGGC*GCUC
Length
11 nucleotides
Bulged bases
6Y6X|1|L5|G|4084, 6Y6X|1|L5|C|4162, 6Y6X|1|L5|U|4163
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_131 not in the Motif Atlas
Homologous match to IL_8C3A_106
Geometric discrepancy: 0.1918
The information below is about IL_8C3A_106
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

6Y6X|1|L5|G|4082
6Y6X|1|L5|U|4083
6Y6X|1|L5|G|4084
6Y6X|1|L5|A|4085
6Y6X|1|L5|G|4086
6Y6X|1|L5|G|4087
6Y6X|1|L5|C|4088
*
6Y6X|1|L5|G|4161
6Y6X|1|L5|C|4162
6Y6X|1|L5|U|4163
6Y6X|1|L5|C|4164

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
60S ribosomal protein L8
Chain LG
60S ribosomal protein L7a
Chain LX
60S ribosomal protein L23a

Coloring options:


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