3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGAG*CGAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_173 not in the Motif Atlas
Geometric match to IL_4V9F_100
Geometric discrepancy: 0.1579
The information below is about IL_4V9F_100
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

6Y6X|1|L5|A|5014
6Y6X|1|L5|G|5015
6Y6X|1|L5|A|5016
6Y6X|1|L5|G|5017
*
6Y6X|1|L5|C|5032
6Y6X|1|L5|G|5033
6Y6X|1|L5|A|5034
6Y6X|1|L5|U|5035

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LR
60S ribosomal protein L19

Coloring options:


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