IL_6Y6X_173
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y6X_173 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1579
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
6Y6X|1|L5|A|5014
6Y6X|1|L5|G|5015
6Y6X|1|L5|A|5016
6Y6X|1|L5|G|5017
*
6Y6X|1|L5|C|5032
6Y6X|1|L5|G|5033
6Y6X|1|L5|A|5034
6Y6X|1|L5|U|5035
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
Coloring options: