IL_6Y6X_183
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCCCGG*UCC
- Length
- 10 nucleotides
- Bulged bases
- 6Y6X|1|L5|C|501, 6Y6X|1|L5|C|502, 6Y6X|1|L5|C|503, 6Y6X|1|L5|G|504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y6X_183 not in the Motif Atlas
- Geometric match to IL_4V88_507
- Geometric discrepancy: 0.2646
- The information below is about IL_4V88_507
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6Y6X|1|L5|G|499
6Y6X|1|L5|G|500
6Y6X|1|L5|C|501
6Y6X|1|L5|C|502
6Y6X|1|L5|C|503
6Y6X|1|L5|G|504
6Y6X|1|L5|G|505
*
6Y6X|1|L5|U|653
6Y6X|1|L5|C|654
6Y6X|1|L5|C|655
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LQ
- 60S ribosomal protein L18
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