IL_6YAL_010
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_010 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.175
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
6YAL|1|2|U|116
6YAL|1|2|C|117
6YAL|1|2|C|118
6YAL|1|2|U|119
6YAL|1|2|U|120
6YAL|1|2|U|121
*
6YAL|1|2|A|333
6YAL|1|2|U|334
6YAL|1|2|U|335
6YAL|1|2|C|336
6YAL|1|2|G|337
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein eS4
- Chain K
- 40S ribosomal protein eS8
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