3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGAC*GGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_013 not in the Motif Atlas
Geometric match to IL_4V9F_085
Geometric discrepancy: 0.3156
The information below is about IL_4V9F_085
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6YAL|1|2|C|187
6YAL|1|2|U|188
6YAL|1|2|G|189
6YAL|1|2|A|190
6YAL|1|2|C|191
*
6YAL|1|2|G|204
6YAL|1|2|G|205
6YAL|1|2|A|206
6YAL|1|2|U|207
6YAL|1|2|G|208

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain K
40S ribosomal protein eS8

Coloring options:


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