IL_6YAL_013

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_013 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.3156

The information below is about IL_4V9F_085

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6YAL|1|2|C|187
6YAL|1|2|U|188
6YAL|1|2|G|189
6YAL|1|2|A|190
6YAL|1|2|C|191
*
6YAL|1|2|G|204
6YAL|1|2|G|205
6YAL|1|2|A|206
6YAL|1|2|U|207
6YAL|1|2|G|208

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein eS8