IL_6YAL_019

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6YAL|1|2|C|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.1896

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YAL|1|2|U|356
6YAL|1|2|U|357
6YAL|1|2|U|358
6YAL|1|2|C|359
6YAL|1|2|G|360
6YAL|1|2|A|361
*
6YAL|1|2|U|383
6YAL|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein eS8

Chain N

40S ribosomal protein uS17