IL_6YAL_028

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6YAL|1|2|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2236

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6YAL|1|2|G|553
6YAL|1|2|A|554
6YAL|1|2|G|555
*
6YAL|1|2|C|575
6YAL|1|2|G|576
6YAL|1|2|A|577
6YAL|1|2|G|578
6YAL|1|2|G|579
6YAL|1|2|A|580
6YAL|1|2|U|581
6YAL|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein uS4

Chain i

40S ribosomal protein eS30