IL_6YAL_031
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 6YAL|1|2|U|597
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_031 not in the Motif Atlas
- Geometric match to IL_5TBW_146
- Geometric discrepancy: 0.1969
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6YAL|1|2|G|596
6YAL|1|2|U|597
6YAL|1|2|C|598
*
6YAL|1|2|G|625
6YAL|1|2|C|626
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- beta-globin mRNA
- Chain F
- 40S Ribosomal protein uS3
- Chain i
- 40S ribosomal protein eS30
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