3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6YAL|1|2|U|597
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_031 not in the Motif Atlas
Geometric match to IL_5TBW_146
Geometric discrepancy: 0.1969
The information below is about IL_5TBW_146
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6YAL|1|2|G|596
6YAL|1|2|U|597
6YAL|1|2|C|598
*
6YAL|1|2|G|625
6YAL|1|2|C|626

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 3
beta-globin mRNA
Chain F
40S Ribosomal protein uS3
Chain i
40S ribosomal protein eS30

Coloring options:


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