3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCUCUCGG*CGAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAL|1|2|C|741
6YAL|1|2|C|742
6YAL|1|2|U|743
6YAL|1|2|C|744
6YAL|1|2|U|745
6YAL|1|2|C|746
6YAL|1|2|G|747
6YAL|1|2|G|748
*
6YAL|1|2|C|788
6YAL|1|2|G|789
6YAL|1|2|A|790
6YAL|1|2|A|791
6YAL|1|2|G|792

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein eS4
Chain I
40S ribosomal protein eS6
Chain J
40S ribosomal protein eS7
Chain N
40S ribosomal protein uS17

Coloring options:

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