IL_6YAL_041

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|G|803
6YAL|1|2|A|804
6YAL|1|2|A|805
6YAL|1|2|A|806
6YAL|1|2|A|807
6YAL|1|2|A|808
6YAL|1|2|A|809
6YAL|1|2|U|810
6YAL|1|2|U|811
6YAL|1|2|A|812
*
6YAL|1|2|U|844
6YAL|1|2|A|845
6YAL|1|2|C|846
6YAL|1|2|C|847
6YAL|1|2|G|848
6YAL|1|2|C|849
6YAL|1|2|A|850
6YAL|1|2|G|851
6YAL|1|2|C|852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain L

40S ribosomal protein uS4

Chain N

40S ribosomal protein uS17

Chain Y

40S ribosomal protein uS8