3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCG*CC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_056 not in the Motif Atlas
Geometric match to IL_5TBW_039
Geometric discrepancy: 0.3251
The information below is about IL_5TBW_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

6YAL|1|2|G|1104
6YAL|1|2|C|1105
6YAL|1|2|G|1106
*
6YAL|1|2|C|1119
6YAL|1|2|C|1120

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C
40S ribosomal protein uS2
Chain D
40S ribosomal protein eS1
Chain T
40S ribosomal protein eS17
Chain c
40S ribosomal protein eS27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.077 s